Reference

All functions

combine_sources()

Combine the dietary proportions from two food sources after running simmr

compare_groups()

Compare dietary proportions for a single source across different groups

compare_sources()

Compare dietary proportions between multiple sources

geese_data

Geese stable isotope mixing data set

geese_data_day1

A smaller version of the Geese stable isotope mixing data set

plot(<simmr_input>)

Plot the simmr_input data created from simmr_load

plot(<simmr_output>)

Plot different features of an object created from simmr_mcmc or simmr_ffvb.

posterior_predictive()

Plot the posterior predictive distribution for a simmr run

print(<simmr_input>)

Print simmr input object

print(<simmr_output>)

Print simmr output object

prior_viz()

Plot the prior distribution for a simmr run

simmr simmr-package

simmr: A package for fitting stable isotope mixing models via JAGS and FFVB in R

simmr_data_1

A simple fake stable isotope mixing data set

simmr_data_2

A 3-isotope fake stable isotope mixing data set

simmr_elicit()

Function to allow informative prior distribution to be included in simmr

simmr_ffvb()

Run a simmr_input object through the Fixed Form Variational Bayes(FFVB) function

simmr_load()

Function to load in simmr data and check for errors

simmr_mcmc()

Run a simmr_input object through the main simmr Markov chain Monte Carlo (MCMC) function

square_data

An artificial data set used to indicate effect of priors

summary(<simmr_output>)

Summarises the output created with simmr_mcmc or simmr_ffvb